sequencing · GitHub Topics

#计算机科学#DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

翻译 - DeepVariant是一个分析管道，它使用深度神经网络从下一代DNA测序数据中调用遗传变异。

Tensorflow 深度神经网络 genomics science dna sequencing genome Bioinformatics 深度学习 ngs 机器学习

Python 3.33 k

3 个月前

bitfieldaudio / OTTO

Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]

翻译 - 采样器，音序器，多引擎合成器和效果-放在盒子里！

audio 树莓派 User interface design synthesizer synth audio-processing music sequencing

C++ 2.65 k

2 年前

OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fastq qc preprocessing filtering adapter overlap Code quality trimming splitting quality-control filter ngs Bioinformatics umi sequencing

C++ 2.02 k

3 个月前

broadinstitute / gatk

Official code repository for GATK versions 4 and up

genomics Apache Spark science dna ngs sequencing genome Bioinformatics

Java 1.78 k

7 天前

galaxyproject / galaxy

Data intensive science for everyone.

Bioinformatics workflow genomics science sequencing ngs dna usegalaxy pipeline workflow-engine Hacktoberfest

Python 1.46 k

3 天前

ablab / spades

SPAdes Genome Assembler

genome-assembly sequencing

C++ 796

6 天前

brentp / mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Test coverage genome depth sequencing Nim Hacktoberfest

Nim 726

2 个月前

xebia-functional / fetch

Simple & Efficient data access for Scala and Scala.js

Scala cats data data-fetching parallelism concurrency sequencing monads

Scala 496

6 天前

twbattaglia / RNAseq-workflow

A repository for setting up a RNAseq workflow

Bioinformatics workflow pipeline sequencing science

R 427

8 年前

ideoforms / isobar

A Python package for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC me...

music composition algorithmic-composition sequencing MIDI

Python 387

2 个月前

milaboratory / mixcr

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

Bioinformatics sequencing

Kotlin 340

3 个月前

ACEnglish / truvari

Structural variant toolkit for VCFs

vcf Bioinformatics 数据科学 genomics annotation-tool benchmarking sequencing

Python 339

8 天前

sanger-pathogens / Roary

Rapid large-scale prokaryote pan genome analysis

genomics sequencing research Bioinformatics global-health infectious-diseases

Perl 335

3 年前

tmhglnd / mercury

A minimal and human-readable language and environment for the live coding of algorithmic electronic music.

mercury language livecoding live-coding performance creative-coding osc sequencing algorithmic-composition

Max 320

4 天前

r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

机器学习 sequencing

R 311

2 年前

samtools / htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

genomics sequencing dna ngs bam cram sam vcf java-api Java

Java 285

16 天前

wurmlab / sequenceserver

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

blast Bioinformatics sequencing genomics 可视化 sequence-alignment Hacktoberfest Ruby JavaScript

JavaScript 278

2 个月前

chanzuckerberg / shasta

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

dna sequencing Assembly nanopore

C++ 272

2 年前

sortmerna / sortmerna

SortMeRNA: next-generation sequence filtering and alignment tool

C++Python alignment Bioinformatics ngs sequencing

C++ 254

2 个月前

biocommons / hgvs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Bioinformatics genomics sequencing

Python 253

13 天前