This is the development home of the workflow management system Snakemake. For general information, see
multiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn)
PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
Customizable workflows based on snakemake and python for the analysis of NGS data
ATLAS - Three commands to start analyzing your metagenome data
RNA-seq workflow using STAR and DESeq2
This Snakemake pipeline implements the GATK best-practices workflow
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
A robust, extensible metagenomics pipeline
The uncompromising Snakemake code formatter
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
A simple Snakemake profile for Slurm without --cluster-config
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
a snakemake pipeline to process ChIP-seq files from GEO or in-house
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.
🐍 Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).