This is the development home of the workflow management system Snakemake. For general information, see
This is the development home of the Snakemake wrapper repository, see
This Snakemake pipeline implements the GATK best-practices workflow
A template for standard compliant snakemake-workflows
The uncompromising Snakemake code formatter
A cookiecutter template for Snakemake workflows
A simple Snakemake profile for Slurm without --cluster-config
Customizable workflows based on snakemake and python for the analysis of NGS data
Scaling studies on high-performance clusters using Snakemake workflows
a snakemake pipeline to process ChIP-seq files from GEO or in-house
Snakemake project to predict orthogroups and find patterns of postive selection with orthofinder and fastcodeml
RNA-seq workflow using STAR and DESeq2