A DSL for data-driven computational pipelines
A curated list of nextflow based pipelines
Nextflow training material
A curated collection of Nextflow implementation patterns
Nextflow Tower system
Example Nextflow pipelines and programming techniques
Workflow management with Nextflow and nf-core
GATK RNA-Seq Variant Calling in Nextflow
Classic hello world script in Nextflow language
List of IARC bioinformatics nextflow pipelines
A repository of pipelines for single-cell data in Nextflow DSL2
Nextflow pipeline to run Metaphlan3 and Humann3 on QC-ed reads.
Nextflow pipeline for turning a set of BUSCO results into a species tree
**DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version
scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
Nextflow pipeline that assembles mitochondria scaffolds using mitobim and checked scaffold by mapping reads to it using bwa mem and calls variants in freebayes for a consensus sequence.