MMseqs2: ultra fast and sensitive search and clustering suite
MMseqs2 app to run on your workstation or servers
Scripts to add mmseqs MSA/templates to alphafold3 input json and also custom template files
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
Alphafold3 using mmseqs2-gpu for sequence query
MMseqs2 Regression Testing
Template for mmseqs search and cluster. Reduce identity between protein sequences.