MMseqs2: ultra fast and sensitive search and clustering suite
MMseqs2 app to run on your workstation or servers
Scripts to add mmseqs MSA/templates to alphafold3 input json and also custom template files
Alphafold3 using mmseqs2-gpu for sequence query
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
MMseqs2 Regression Testing
Template for mmseqs search and cluster. Reduce identity between protein sequences.