MDAnalysis is a Python library to analyze molecular dynamics simulations.
Sample codes for my book on molecular dynamics simulation
Molecular simulation in Julia
Cloud-based molecular simulations for everyone
Conversion tool for molecular simulations
Molecular dynamics and Monte Carlo soft matter simulation on GPUs.
Sire Molecular Simulations Framework
Molecular dynamics simulation software
Universal extensible molecular simulation engine
Monte Carlo and Molecular Dynamics Simulation Package
Course repository for 06-640 - Molecular simulation
Flexible storage of chemical topology for molecular simulation
Tool to build force field input files for molecular simulation
Running a molecular simulation with the polarizable force field in LAMMPS
molecular dynamics simulation and analysis. 分子动力学模拟和分析。
Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.