MMseqs2: ultra fast and sensitive search and clustering suite
LinClust linear time clustering algorithm (Steinegger and Soding, 2018)
The RBiotools package provides support for Basic Comparative Microbial Genomics. It supports microbial comparative genomics with functions parameterized by a list of Gen-Bank accession numbers and R i...
Lightweight and reproducible protein clustering pipeline using MMseqs2 Linclust. Designed for small-scale testing, educational use, and structural exploration with synthetic data.
Repo for the hands-on demonstration that is part of the presentation - "Metagenomic pathogen detection using MMseqs2, Plass, and Linclust" by Dr. Martin Steinegger for the BVCN Conference 2021